Datasets/column's name

Descriptionof variables

Dataset: NKC_CELL_6922

PAP Smear data from 1969 until  2022

AGE           

Age

ANS_CLINIC    

The clinic sends response

COUNTY_ID     

County's id, the county which the smears/histology were located in

DEB_CLINIC    

The identification for the laboratory

DIAG_ID      

The identification of diagnose

LABORATORY_ID

The identification for the laboratory

DIFF_DAYS

The days between sample date and response date

PERSON_ID      

Person-id (used instead of PNR)

REFERRAL_NR   

Referral number

REF_SITE      

Clinic

REG_DATE      

Date of registration

REFERRAL_TYPE

Type of Referral 

REM_CLINIC    

The clinic which sends referral for the patient

RESIDC        

County

RESIDK        

Municipal code

RESPONSE_DATE

Response date for sample

SAMPLE_DATE  

Date of sample

SAMPLE_ID     

The identification of sample

SAMPLE_YR    

Year of sample

SCR_TYPE      

Type of screening 1.Organized screening 2. Other cell test

SNOMED        

The codes for diagnoe (Snomed)

X_REG_DATE    

New variable for date of registration (The cleaned variable which is derived from REG_DATE )

X_RESPONSE_DATE

New variable for response date (cleaned data) in date format

X_SAMPLE_DATE 

New variable for sample date   (the cleaned variable, is derived from SAMPLE_DATE )

X_SAMPLE_YR   

New variable for the year of sample (The cleaned variable which is derived from SAMPLE_YR )

X_SNOMED      

New variable for Snomed code  (The cleaned variable which is derived from SNOMED )

 

 

NKC_EXT_HPV

HPV data from different microbiological labs

AGE

Age

CLINIC

Clinic

COUNTY_ID

County's id

DATASRC

Screening labs for Microbiology HPV tests ((MA: Malmö, ALE: Aleris, STH: Stockholm, SMA: Småland, GBG: Göteborg))

HPV_TYPE

The type of HPV (16, 32, …)

HPVDIAG

The diagnose of HPV

LAB_ID

Lab-id

LABORATORY_ID

The identification for the laboratory

PERSON_ID , PNR       

Person-id

REFERRAL_NR   

Referral number

REFERRAL_NR2

External referral number

REFERRAL_TYPE

Type of Referral 

RESPONSE_DATE

Response date for HPV test

SCR_TYPE

Type of screening 1.Organized screening 2. Other cell test

TRANSLATION

The type of HPV and translation of HPV as result

X_REG_DATE    

The date of registration (cleaned data for reg_date)

X_SAMPLE_DATE 

The date of sample

X_SAMPLE_YR  

The year of sample

 

 

NKC_HPV: HPV data from Cytology

HPV data from Cytology

AGE

Age

ANS_CLINIC    

The clinic sends response

COUNTY_ID

County's id

DEB_CLINIC    

The clinic which charges the sample

DIAG_ID

Diagnose id

HPVDIAG

The diagnose of HPV

LABORATORY_ID

The identification for the laboratory

PERSON_ID , PNR       

Person-id

REF_SITE      

Clinic

REFERRAL_NR   

Referral number

REFERRAL_TYPE

Type of Referral 

REG_DATE

Register date

REM_CLINIC    

The clinic which sends referral for the patient

RESIDC        

County

RESIDK        

Municipal code

RESPONSE_DATE

Response date for HPV test

SAMPLE_DATE

Sample's date

SAMPLE_ID

Sample's id

SAMPLE_TYPE

Type of sample

SAMPLE_YR

Sample's year

SCR_TYPE

Type of screening 1.Organized screening 2. Other cell test

SNOMED

Snomed code (diagnose code)

X_REFERRAL_TYPE

The new variable for referral_type

X_REG_DATE    

The date of registration (cleaned data for reg_date)

X_RESPONSE_DATE

The new variable for response date (cleaned variable)

X_SAMPLE_DATE 

The date of sample (cleaned variable)

X_SAMPLE_YR  

The year of sample

X_SNOMED

The cleaned variable which is used instead of Snomed

 

 

Dataset: NKC_INV_9321

Invitations from year 1993 until 2022

AGE

Age

CANCEL_DATE

The date of cancelling of invitation

DEREG_REASON

The reason for deregister of invitation

INVITATION_ID

Invitation's id

INV_DATE

The date of invitation

INV_TYPE

Type of invitation

INV_YEAR

The year of invitation

LABORATORY_ID

The identification for the laboratory

PERSON_ID

Woman's id

RCC

Indicator to know if RCC sends invitation data 1=Yes; .=No

RESIDC

County

RESIDF

Parish

RESIDK

Municipal code

SELFTEST

Selftest=1 is for HPV-selftest invation

X_INV_DATE

The new variable for date of invitation  (The cleaned data which is derived from INV_DATE)

X_INV_YR

The new variable for year of invitation (The cleaned data which is derived from INV_YR )

 

 

Dataset: NKC_INV_KIT_1921

Invitations to selftest (HPV-Kit) from year 2019 until 2022

AGE

Age

CANCEL_DATE

The date of cancelling of invitation

DEREG_REASON

The reason for cancel of invitation to selftest (HPV-Kit)

DIRECT_SEND

If invitation is related to direct sent HPV-KIT or not

INV_DATE

The date of invitation

INV_TYPE

Type of invitation

INV_YEAR

The year of invitation

INVITATION_ID

Invitation's id

LABORATORY_ID

The identification for the laboratory

PERSON_ID

Woman's id

RCC

Indicator to know if RCC sends invitation data 1=Yes; .=No

RESIDC

County

RESIDK

Parish

X_INV_DATE

Municipal code

X_INV_TYPE

The type of invitation (when there are other types in data, we classify the invitation as Cancelled/Blocked, Invitation, Reminder

X_INV_YR

The new variable for year of invitation (The cleaned data which is derived from INV_YR )

 

 

Dataset: NKC_PAD_6922

Pap smear data

AGE            

Age

ANS_CLINIC    

The clinic which sends response

COUNTY_ID    

County's id, the county which the smears/histology were located in

DEB_CLINIC    

The clinic which charges the samples

DIAG_ID       

The id of diagnose

DIAG_NR      

Diagnose code's number

DOCTOR       

Doctor

LABORATORY_ID  

The identification for the laboratory

OBLITERATED  

Cancelled test for pad (Y=yes; . or  'N'=No

PERSON_ID  , PNR  

Person-id (used instead of Person nr.)

REFERRAL_NR   

Referral number

REFERRAL_TYPE 

Type of Referral 

REF_SITE      

Clinic

REG_DATE     

Date of registration

REM_CLINIC    

The clinic which sends referral for patient

RESIDC        

County

RESIDK        

Municipal code

RESPONSE_DATE

Response date

SAMPLE_DATE  

The date of sample

SAMPLE_ID    

The identification of sample

SAMPLE_NR     

Sample number

SAMPLE_TYPE   

Type of sample 1.Organized screening 2. Other cell test

SAMPLE_YR     

The year of sample

SNOMED        

Diagnose code (Snomed)

TOPO          

Topo code

X_REG_DATE   

New variable for date of registration   (The cleaned variable which is derived from REG_DATE )

X_RESPONSE_DATE

The new variable for response date (cleaned variable)

X_SAMPLE_DATE 

New variable is used instead of sample_date (The cleaned variable which is derived from SAMPLE_DATE  )

X_SAMPLE_YR   

New variable is used instead of SAMPLE_YR (The cleaned variable which is derived from SAMPLE_YR   )

X_SNOMED      

New variable for Snomed code  (The cleaned variable which is derived from SNOMED )

 

 

Dataset NKC_PERSON

Women's birth date and person-id

BIRTH_DATE

Birth date (This variable is missing before year 1880)

BIRTH_YR

Birth year (This variable is missing before year 1880)

CREATE_DATE

The date of creation of new person-id

PERSON_ID, PNR

Person-id

VALID_PNR

Indicator for validate of person number. This column derived from Pnr.

 

 

NKC_PAD_TRANSLATED

Translation of pap smear

AGE         

Age

ANS_CLINIC      

The clinic which sends response

COUNTY_ID    

County's id

LAB_ID         

Lab-id

PAD_CLASS     

Classification of pad

PAD_SEV

The severity av Pad

PERSON_ID       

Person-id

REFERRAL_NR       

Referral nr.

REFERRAL_TYPE 

Referral type

REM_CLINIC        

The clinic which charges the samples

RESIDK  

Municipal code

RESPONSE_DATE

The date of response for sample (the new table as Joakim wishes from 2014)

SAMPLE_ID 

The identification of sample

SAMPLE_TYPE

The type of sample

SNOMED_ORIGINAL

The original Snomed code

SNOMED_TRANSLATED

 

TRANSLATED

Indicator 1. We can translate Snomed code 0. We can not translate the Snomed code

TOPO3

Topo (the first 3 characters)

X_REG_DATE

The date of registration should be used instead of reg_date

 X_SAMPLE_DATE 

The cleaned data should used instead of sample_date

X_SAMPLE_YR  

The year of sample

 

 

NKC_TRANS_CELL

The dataset for translated cell sample data

AGE

Age at diagnose

COUNTY_ID

County's id, the county which the smears/histologies were located in

LAB_ID

Lab's id

LCODES

The combination of original codes

M00110

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M0010 is present in UCODES then column M00110 is set to 1 else 0

M09005

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M09005 is present in UCODES then column M09005 is set to 1 else 0

M09010

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M09010 is present in UCODES then column M09010 is set to 1 else 0

M09019

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M09019 is present in UCODES then column M09019 is set to 1 else 0

M69700

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M69700 is present in UCODES then column M69700 is set to 1 else 0

M69710

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M69710 is present in UCODES then column M69710 is set to 1 else 0

M69719

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M69719 is present in UCODES then column M69719 is set to 1 else 0

M69720

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M69720 is present in UCODES then column M69720 is set to 1 else 0

M74006

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M74006 is present in UCODES then column M74006 is set to 1 else 0

M74007

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M74007 is present in UCODES then column M74007 is set to 1 else 0

M76700

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M76700 is present in UCODES then column M76700 is set to 1 else 0

M80009

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M80009 is present in UCODES then column M80009 is set to 1 else 0

M80702

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M80702 is present in UCODES then column M80702 is set to 1 else 0

M80703

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M80703 is present in UCODES then column M80703 is set to 1 else 0

M80770

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M80770 is present in UCODES then column M80770 is set to 1 else 0

M80772

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M80772 is present in UCODES then column M80772 is set to 1 else 0

M81401

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M81401 is present in UCODES then column M81401 is set to 1 else 0

M81403

New column derived from column with same name in view TRANSLATION_MATRIX

 

If value M81403 is present in UCODES then column M81403 is set to 1 else 0

PERSON_ID

Person-id is used instead of PNR.

RESIDK

Municipal code

SAMPLE_ID

Sample id

SCR_TYPE

Type of screening 1.Organized screening 2. Other cell test

SNOMED_SEVERITY

The severity of the worst Snomed code in Sample

UCODES

Unified codes. New column derived from column with same name in view TRANSLATION_MATRIX

X_REG_DATE

New variable for date of registration   (The cleaned variable which is derived from REG_DATE )

X_SAMPLE_DATE

New variable for  SAMPLE_DATE (The cleaned variable which is derived from SAMPLE_DATE )

X_SAMPLE_YR

Sample year (derived variable from SAMPLE_YR)

 

 

 

NKC_TRANS_CELL_DIAG

Translation table  for pap smears per diagnose

AGE

Age

ANS_CLINIC    

The clinic sends response

BIRTH_DATE

Birth date

COUNTY_ID

County's id

LAB_ID

Lab-id

LABORATORY_ID

The identification for the laboratory

PERSON_ID        

Person-id

REFERRAL_NR   

Referral number

REFERRAL_TYPE

Type of Referral 

REM_CLINIC    

The clinic which sends referral for the patient

SAMPLE_ID       

Sample's id

REM_CLINIC    

The clinic which sends referral for the patient

RESIDK  

County

SAMPLE_ID

Sample's id

SCR_TYPE

Type of screening 1.Organized screening 2. Other cell test

TRAN_ID

The translation-id for Snomed code

TRAN_RULE

The rule /source for translation of Snomed ('lab'=if the lab uses the translation for Snomed code, 'NA' if the Snomed code is not tanslated

TRAN_SNOMED

The translation of Snomed code

X_REG_DATE    

The date of registration (cleaned data for reg_date)

X_SAMPLE_DATE 

The date of sample

X_SAMPLE_YR  

The year of sample

X_SNOMED

The cleaned variable which is used instead of Snomed