Datasets/column's name |
Descriptionof variables |
Dataset:
NKC_CELL_6922 |
PAP
Smear data from 1969 until 2022 |
AGE |
Age |
ANS_CLINIC |
The
clinic sends response |
COUNTY_ID |
County's
id, the county which the smears/histology were located in |
DEB_CLINIC |
The
identification for the laboratory |
DIAG_ID |
The
identification of diagnose |
LABORATORY_ID |
The
identification for the laboratory |
DIFF_DAYS |
The
days between sample date and response date |
PERSON_ID |
Person-id
(used instead of PNR) |
REFERRAL_NR |
Referral
number |
REF_SITE |
Clinic |
REG_DATE |
Date
of registration |
REFERRAL_TYPE
|
Type
of Referral |
REM_CLINIC |
The
clinic which sends referral for the patient |
RESIDC |
County |
RESIDK |
Municipal
code |
RESPONSE_DATE |
Response
date for sample |
SAMPLE_DATE |
Date
of sample |
SAMPLE_ID |
The
identification of sample |
SAMPLE_YR |
Year
of sample |
SCR_TYPE |
Type
of screening 1.Organized screening 2. Other cell test |
SNOMED |
The
codes for diagnoe (Snomed) |
X_REG_DATE |
New
variable for date of registration (The cleaned variable which is derived from
REG_DATE ) |
X_RESPONSE_DATE |
New
variable for response date (cleaned data) in date format |
X_SAMPLE_DATE |
New
variable for sample date (the cleaned
variable, is derived from SAMPLE_DATE ) |
X_SAMPLE_YR |
New
variable for the year of sample (The cleaned variable which is derived from
SAMPLE_YR ) |
X_SNOMED |
New
variable for Snomed code (The cleaned
variable which is derived from SNOMED ) |
|
|
NKC_EXT_HPV |
HPV
data from different microbiological labs |
AGE |
Age |
CLINIC |
Clinic |
COUNTY_ID
|
County's
id |
DATASRC |
Screening
labs for Microbiology HPV tests ((MA: Malmö, ALE: Aleris, STH: Stockholm,
SMA: Småland, GBG: Göteborg)) |
HPV_TYPE |
The
type of HPV (16, 32, …) |
HPVDIAG |
The
diagnose of HPV |
LAB_ID
|
Lab-id |
LABORATORY_ID |
The
identification for the laboratory |
PERSON_ID
, PNR |
Person-id |
REFERRAL_NR |
Referral
number |
REFERRAL_NR2 |
External
referral number |
REFERRAL_TYPE
|
Type
of Referral |
RESPONSE_DATE
|
Response
date for HPV test |
SCR_TYPE |
Type
of screening 1.Organized screening 2. Other cell test |
TRANSLATION |
The
type of HPV and translation of HPV as result |
X_REG_DATE |
The
date of registration (cleaned data for reg_date) |
X_SAMPLE_DATE |
The
date of sample |
X_SAMPLE_YR |
The
year of sample |
|
|
NKC_HPV:
HPV data from Cytology |
HPV
data from Cytology |
AGE |
Age |
ANS_CLINIC |
The
clinic sends response |
COUNTY_ID
|
County's
id |
DEB_CLINIC |
The
clinic which charges the sample |
DIAG_ID |
Diagnose
id |
HPVDIAG |
The
diagnose of HPV |
LABORATORY_ID |
The
identification for the laboratory |
PERSON_ID
, PNR |
Person-id |
REF_SITE |
Clinic |
REFERRAL_NR |
Referral
number |
REFERRAL_TYPE
|
Type
of Referral |
REG_DATE |
Register
date |
REM_CLINIC |
The
clinic which sends referral for the patient |
RESIDC |
County |
RESIDK |
Municipal
code |
RESPONSE_DATE |
Response
date for HPV test |
SAMPLE_DATE |
Sample's
date |
SAMPLE_ID |
Sample's
id |
SAMPLE_TYPE |
Type
of sample |
SAMPLE_YR |
Sample's
year |
SCR_TYPE |
Type
of screening 1.Organized screening 2. Other cell test |
SNOMED |
Snomed
code (diagnose code) |
X_REFERRAL_TYPE |
The
new variable for referral_type |
X_REG_DATE |
The
date of registration (cleaned data for reg_date) |
X_RESPONSE_DATE |
The
new variable for response date (cleaned variable) |
X_SAMPLE_DATE |
The
date of sample (cleaned variable) |
X_SAMPLE_YR |
The
year of sample |
X_SNOMED |
The
cleaned variable which is used instead of Snomed |
|
|
Dataset:
NKC_INV_9321 |
Invitations
from year 1993 until 2022 |
AGE |
Age |
CANCEL_DATE |
The
date of cancelling of invitation |
DEREG_REASON |
The
reason for deregister of invitation |
INVITATION_ID |
Invitation's
id |
INV_DATE |
The
date of invitation |
INV_TYPE |
Type
of invitation |
INV_YEAR |
The
year of invitation |
LABORATORY_ID |
The
identification for the laboratory |
PERSON_ID |
Woman's
id |
RCC |
Indicator
to know if RCC sends invitation data 1=Yes; .=No |
RESIDC |
County |
RESIDF |
Parish |
RESIDK |
Municipal
code |
SELFTEST |
Selftest=1
is for HPV-selftest invation |
X_INV_DATE |
The
new variable for date of invitation
(The cleaned data which is derived from INV_DATE) |
X_INV_YR |
The
new variable for year of invitation (The cleaned data which is derived from
INV_YR ) |
|
|
Dataset:
NKC_INV_KIT_1921 |
Invitations
to selftest (HPV-Kit) from year 2019 until 2022 |
AGE |
Age |
CANCEL_DATE |
The
date of cancelling of invitation |
DEREG_REASON |
The
reason for cancel of invitation to selftest (HPV-Kit) |
DIRECT_SEND |
If
invitation is related to direct sent HPV-KIT or not |
INV_DATE |
The
date of invitation |
INV_TYPE |
Type
of invitation |
INV_YEAR |
The
year of invitation |
INVITATION_ID |
Invitation's
id |
LABORATORY_ID |
The
identification for the laboratory |
PERSON_ID |
Woman's
id |
RCC |
Indicator
to know if RCC sends invitation data 1=Yes; .=No |
RESIDC |
County |
RESIDK |
Parish |
X_INV_DATE |
Municipal
code |
X_INV_TYPE |
The
type of invitation (when there are other types in data, we classify the
invitation as Cancelled/Blocked, Invitation, Reminder |
X_INV_YR |
The
new variable for year of invitation (The cleaned data which is derived from
INV_YR ) |
|
|
Dataset:
NKC_PAD_6922 |
Pap
smear data |
AGE |
Age |
ANS_CLINIC |
The
clinic which sends response |
COUNTY_ID |
County's
id, the county which the smears/histology were located in |
DEB_CLINIC |
The
clinic which charges the samples |
DIAG_ID |
The
id of diagnose |
DIAG_NR |
Diagnose
code's number |
DOCTOR |
Doctor |
LABORATORY_ID |
The
identification for the laboratory |
OBLITERATED |
Cancelled
test for pad (Y=yes; . or 'N'=No |
PERSON_ID , PNR
|
Person-id
(used instead of Person nr.) |
REFERRAL_NR |
Referral
number |
REFERRAL_TYPE |
Type
of Referral |
REF_SITE |
Clinic |
REG_DATE |
Date
of registration |
REM_CLINIC |
The
clinic which sends referral for patient |
RESIDC |
County |
RESIDK |
Municipal
code |
RESPONSE_DATE |
Response
date |
SAMPLE_DATE |
The
date of sample |
SAMPLE_ID |
The
identification of sample |
SAMPLE_NR |
Sample
number |
SAMPLE_TYPE |
Type
of sample 1.Organized screening 2. Other cell test |
SAMPLE_YR |
The
year of sample |
SNOMED |
Diagnose
code (Snomed) |
TOPO |
Topo
code |
X_REG_DATE |
New
variable for date of registration
(The cleaned variable which is derived from REG_DATE ) |
X_RESPONSE_DATE |
The
new variable for response date (cleaned variable) |
X_SAMPLE_DATE |
New
variable is used instead of sample_date (The cleaned variable which is
derived from SAMPLE_DATE ) |
X_SAMPLE_YR |
New
variable is used instead of SAMPLE_YR (The cleaned variable which is derived
from SAMPLE_YR ) |
X_SNOMED |
New
variable for Snomed code (The cleaned
variable which is derived from SNOMED ) |
|
|
Dataset
NKC_PERSON |
Women's
birth date and person-id |
BIRTH_DATE
|
Birth
date (This variable is missing before year 1880) |
BIRTH_YR
|
Birth
year (This variable is missing before year 1880) |
CREATE_DATE |
The
date of creation of new person-id |
PERSON_ID,
PNR |
Person-id |
VALID_PNR
|
Indicator
for validate of person number. This column derived from Pnr. |
|
|
NKC_PAD_TRANSLATED |
Translation
of pap smear |
AGE |
Age |
ANS_CLINIC |
The
clinic which sends response |
COUNTY_ID |
County's
id |
LAB_ID |
Lab-id |
PAD_CLASS |
Classification
of pad |
PAD_SEV
|
The
severity av Pad |
PERSON_ID |
Person-id |
REFERRAL_NR |
Referral
nr. |
REFERRAL_TYPE |
Referral
type |
REM_CLINIC |
The
clinic which charges the samples |
RESIDK |
Municipal
code |
RESPONSE_DATE
|
The
date of response for sample (the new table as Joakim wishes from 2014) |
SAMPLE_ID |
The
identification of sample |
SAMPLE_TYPE |
The
type of sample |
SNOMED_ORIGINAL
|
The
original Snomed code |
SNOMED_TRANSLATED
|
|
TRANSLATED |
Indicator
1. We can translate Snomed code 0. We can not translate the Snomed code |
TOPO3 |
Topo
(the first 3 characters) |
X_REG_DATE
|
The
date of registration should be used instead of reg_date |
X_SAMPLE_DATE |
The
cleaned data should used instead of sample_date |
X_SAMPLE_YR |
The
year of sample |
|
|
NKC_TRANS_CELL |
The
dataset for translated cell sample data |
AGE |
Age
at diagnose |
COUNTY_ID |
County's
id, the county which the smears/histologies were located in |
LAB_ID |
Lab's
id |
LCODES |
The combination
of original codes |
M00110 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M0010 is present in UCODES then column M00110 is set to 1 else 0 |
M09005 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M09005 is present in UCODES then column M09005 is set to 1 else 0 |
M09010 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M09010 is present in UCODES then column M09010 is set to 1 else 0 |
M09019 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M09019 is present in UCODES then column M09019 is set to 1 else 0 |
M69700 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M69700 is present in UCODES then column M69700 is set to 1 else 0 |
M69710 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M69710 is present in UCODES then column M69710 is set to 1 else 0 |
M69719 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M69719 is present in UCODES then column M69719 is set to 1 else 0 |
M69720 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M69720 is present in UCODES then column M69720 is set to 1 else 0 |
M74006 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M74006 is present in UCODES then column M74006 is set to 1 else 0 |
M74007 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M74007 is present in UCODES then column M74007 is set to 1 else 0 |
M76700 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M76700 is present in UCODES then column M76700 is set to 1 else 0 |
M80009 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M80009 is present in UCODES then column M80009 is set to 1 else 0 |
M80702 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M80702 is present in UCODES then column M80702 is set to 1 else 0 |
M80703 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M80703 is present in UCODES then column M80703 is set to 1 else 0 |
M80770 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M80770 is present in UCODES then column M80770 is set to 1 else 0 |
M80772 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M80772 is present in UCODES then column M80772 is set to 1 else 0 |
M81401 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M81401 is present in UCODES then column M81401 is set to 1 else 0 |
M81403 |
New
column derived from column with same name in view TRANSLATION_MATRIX |
|
If
value M81403 is present in UCODES then column M81403 is set to 1 else 0 |
PERSON_ID |
Person-id
is used instead of PNR. |
RESIDK |
Municipal
code |
SAMPLE_ID |
Sample
id |
SCR_TYPE |
Type
of screening 1.Organized screening 2. Other cell test |
SNOMED_SEVERITY |
The
severity of the worst Snomed code in Sample |
UCODES |
Unified
codes. New column derived from column with same name in view
TRANSLATION_MATRIX |
X_REG_DATE |
New
variable for date of registration (The
cleaned variable which is derived from REG_DATE ) |
X_SAMPLE_DATE |
New
variable for SAMPLE_DATE (The cleaned
variable which is derived from SAMPLE_DATE ) |
X_SAMPLE_YR |
Sample
year (derived variable from SAMPLE_YR) |
|
|
|
|
NKC_TRANS_CELL_DIAG |
Translation
table for pap smears per diagnose |
AGE |
Age |
ANS_CLINIC |
The
clinic sends response |
BIRTH_DATE |
Birth
date |
COUNTY_ID
|
County's
id |
LAB_ID
|
Lab-id |
LABORATORY_ID |
The
identification for the laboratory |
PERSON_ID |
Person-id |
REFERRAL_NR |
Referral
number |
REFERRAL_TYPE
|
Type
of Referral |
REM_CLINIC |
The
clinic which sends referral for the patient |
SAMPLE_ID |
Sample's
id |
REM_CLINIC |
The
clinic which sends referral for the patient |
RESIDK |
County |
SAMPLE_ID |
Sample's
id |
SCR_TYPE |
Type
of screening 1.Organized screening 2. Other cell test |
TRAN_ID |
The
translation-id for Snomed code |
TRAN_RULE |
The
rule /source for translation of Snomed ('lab'=if the lab uses the translation
for Snomed code, 'NA' if the Snomed code is not tanslated |
TRAN_SNOMED |
The
translation of Snomed code |
X_REG_DATE |
The
date of registration (cleaned data for reg_date) |
X_SAMPLE_DATE |
The
date of sample |
X_SAMPLE_YR |
The
year of sample |
X_SNOMED |
The
cleaned variable which is used instead of Snomed |